Containers appear empty

Some containers will appear empty. I built a new structure, where I have 3 armored animal pens, stacked on top of each other. At first I was just getting the top pen showing the main inventory as empty from time to time, but now a chest on the structure below is also showing empty. I can add thing into either one, but they just appear to vanish when I do. Relogging the client sometimes makes the contents visible again.

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